SNP Profiles of UF 712 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	GG	AA	AA	GG	GG	CC	AT	AA	GG	GG	AA	AA
1._MITC-000350	AA	CC	GG	AA	AA	GG	GG	CC	AT	AA	GG	GG	AA	AA
2._MITC-000039	AA	CC	GG	AA	AA	GG	GG	CC	AT	AA	GG	GG	AA	AA
3._RUQ_1683	_	_	_	_	_	_	GG	_	_	_	_	_	_	_
4._GC-01-089-5-06	AA	CC	GG	AA	TT	CC	GG	GG	TT	TT	GG	CC	TT	TT
5._GC-01-089-5-06	AA	CC	GG	AA	TT	CC	GG	GG	TT	TT	GG	CC	TT	TT
6._GC-01-089-5-06	AA	CC	GG	AA	TT	CC	GG	GG	TT	TT	GG	CC	TT	TT
7._GC-01-089-5-06	AA	CC	GG	AA	TT	CC	GG	GG	TT	TT	GG	CC	TT	TT
8._RUQ_1638	_	_	_	_	_	CC	GG	_	AT	_	_	_	_	_
9._RUQ_1638	_	_	_	_	_	CC	GG	_	AT	_	_	_	_	_
10._UF_712	_	_	_	_	_	CC	GG	_	AT	_	_	_	_	_
11._UF_712	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
12._UF_712	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
13._UF_712	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
14._UF_712	_	_	_	_	_	CC	GG	_	TT	_	_	_	_	_
15._RUQ_1683	_	_	_	_	_	CC	_	GG	_	_	GG	_	_	_
16._RUQ_1638	_	_	_	_	_	CC	_	GG	_	_	GG	_	_	_
17._UF_712	_	_	_	_	_	CC	GG	_	AT	_	_	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	GG	CC	GG	GG	GG	CC	AA	GG	GG	CC	AA
1._MITC-000350	AA	CC	AA	GG	CC	GG	GG	GG	CC	AA	GG	GG	CC	AA
2._MITC-000039	AA	CC	AA	GG	CC	GG	GG	GG	CC	AA	GG	GG	CC	AA
3._RUQ_1683	_	GG	_	_	_	_	_	_	CC	_	CC	_	_	_
4._GC-01-089-5-06	TT	GG	TT	_	_	GG	CC	CC	CC	TT	_	GG	GG	TT
5._GC-01-089-5-06	TT	GG	TT	_	_	GG	CC	CC	CC	TT	CC	GG	GG	TT
6._GC-01-089-5-06	TT	GG	TT	_	_	GG	CC	CC	CC	TT	CC	GG	GG	TT
7._GC-01-089-5-06	TT	GG	TT	_	_	GG	CC	CC	CC	TT	CC	GG	GG	TT
8._RUQ_1638	_	GG	TT	_	CC	_	CC	_	CC	TT	CC	GG	GG	TT
9._RUQ_1638	_	GG	TT	_	CC	_	CC	_	CC	TT	CC	GG	GG	TT
10._UF_712	_	GG	TT	_	CC	_	CC	_	CC	TT	CC	GG	GG	TT
11._UF_712	_	GG	TT	_	_	_	CC	_	CC	TT	_	GG	GG	TT
12._UF_712	_	GG	TT	_	_	_	CC	_	CC	TT	CC	GG	GG	TT
13._UF_712	_	GG	TT	_	_	_	CC	_	CC	TT	CC	GG	GG	TT
14._UF_712	_	GG	TT	_	_	_	CC	_	CC	TT	CC	GG	GG	TT
15._RUQ_1683	_	GG	_	CC	_	_	_	CC	CC	TT	CC	GG	GG	TT
16._RUQ_1638	_	GG	_	CC	_	_	_	CC	CC	TT	CC	GG	GG	TT
17._UF_712	_	GG	TT	_	CC	_	CC	_	CC	TT	CC	GG	GG	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	GG	CC	GG	AA	GG	GG	CC	CC	AA	AA	AA	GG
1._MITC-000350	GG	TT	GG	CC	GG	AA	GG	GG	CC	CC	AA	AA	AA	GG
2._MITC-000039	GG	TT	GG	CC	GG	AA	GG	GG	CC	CC	AA	AA	AA	GG
3._RUQ_1683	_	_	_	_	_	AA	_	_	_	_	_	_	AA	_
4._GC-01-089-5-06	CC	AA	GG	CC	CC	AA	GG	CC	CC	GG	TT	AA	AA	GG
5._GC-01-089-5-06	CC	AA	GG	CC	CC	AA	GG	CC	CC	GG	TT	AA	AA	GG
6._GC-01-089-5-06	CC	AA	GG	CC	CC	AA	GG	CC	CC	GG	TT	AA	AA	GG
7._GC-01-089-5-06	CC	AA	GG	CC	CC	AA	GG	CC	CC	GG	TT	AA	AA	GG
8._RUQ_1638	CC	_	_	CC	CC	AA	_	CC	CC	_	_	AA	_	_
9._RUQ_1638	CC	_	_	CC	CC	AA	_	CC	CC	_	_	AA	_	_
10._UF_712	CC	_	_	CC	CC	AA	_	CC	CC	_	_	AA	_	_
11._UF_712	CC	_	_	CC	CC	AA	_	CC	CC	_	_	AA	_	_
12._UF_712	CC	_	_	CC	CC	AA	_	CC	CC	_	_	AA	_	_
13._UF_712	CC	_	_	CC	CC	AA	_	CC	CC	_	_	AA	_	_
14._UF_712	CC	_	_	CC	CC	AA	_	CC	CC	_	_	AA	_	_
15._RUQ_1683	_	_	GG	CC	CC	AA	_	CC	_	_	_	_	AA	GG
16._RUQ_1638	_	_	GG	CC	CC	AA	_	CC	_	_	_	_	AA	GG
17._UF_712	CC	_	_	CC	CC	_	_	CC	CC	_	_	AA	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	GG	AA	AA	AA	AA	GG	GG	AA	AA	AA	CC	GG	GG
1._MITC-000350	TT	GG	AA	AA	AA	AA	GG	GG	AA	AA	AA	CC	GG	GG
2._MITC-000039	TT	GG	AA	AA	AA	AA	GG	GG	AA	AA	AA	CC	GG	GG
3._RUQ_1683	_	_	_	_	_	_	_	_	_	AA	_	_	_	GG
4._GC-01-089-5-06	TT	CC	AA	AA	AA	AA	CC	_	AA	AA	AA	GG	GG	GG
5._GC-01-089-5-06	TT	CC	AA	AA	AA	AA	CC	_	AA	AA	AA	GG	GG	GG
6._GC-01-089-5-06	TT	CC	AA	AA	AA	AA	CC	_	AA	AA	AA	GG	GG	GG
7._GC-01-089-5-06	TT	CC	AA	AA	AA	AA	CC	_	AA	AA	AA	GG	GG	GG
8._RUQ_1638	TT	_	_	_	AA	_	_	_	_	AA	_	GG	_	GG
9._RUQ_1638	TT	_	_	_	AA	_	_	_	_	AA	_	GG	_	GG
10._UF_712	TT	_	_	_	AA	_	_	_	_	AA	_	GG	_	GG
11._UF_712	TT	_	_	_	AA	_	_	_	_	AA	_	GG	_	GG
12._UF_712	TT	_	_	_	AA	_	_	_	_	AA	_	GG	_	GG
13._UF_712	TT	_	_	_	AA	_	_	_	_	AA	_	GG	_	GG
14._UF_712	TT	_	_	_	AA	_	_	_	_	AA	_	GG	_	GG
15._RUQ_1683	TT	_	_	_	_	_	CC	_	_	AA	_	GG	_	GG
16._RUQ_1638	TT	_	_	_	_	_	CC	_	_	AA	_	GG	_	GG
17._UF_712	TT	_	_	_	AA	_	_	_	_	AA	_	GG	_	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	GG	GG	AG	AA	AA	CC	AA	AA	AA	AA	AA	CC	GG
1._MITC-000350	CC	GG	GG	AG	AA	AA	CC	AA	AA	AA	AA	AA	CC	GG
2._MITC-000039	CC	GG	GG	AG	AA	AA	CC	AA	AA	AA	AA	AA	CC	GG
3._RUQ_1683	_	_	CC	_	_	_	GG	AA	_	_	_	_	CC	CC
4._GC-01-089-5-06	CC	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC
5._GC-01-089-5-06	CC	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC
6._GC-01-089-5-06	CC	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC
7._GC-01-089-5-06	CC	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC
8._RUQ_1638	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
9._RUQ_1638	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
10._UF_712	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
11._UF_712	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
12._UF_712	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
13._UF_712	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
14._UF_712	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
15._RUQ_1683	CC	_	CC	CT	_	_	GG	AA	TT	_	_	TT	CC	_
16._RUQ_1638	CC	_	CC	CT	_	_	GG	AA	TT	_	_	TT	CC	_
17._UF_712	TT	_	_	CT	_	_	GG	_	_	_	_	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AA	CC	AA	CC	GG	CC	GG	GG	GG	TT	AA	AA	X_X	X_X
1._MITC-000350	AA	CC	AA	CC	GG	CC	GG	GG	GG	TT	AA	AA	X_X	X_X
2._MITC-000039	AA	CC	AA	CC	GG	CC	GG	GG	GG	TT	AA	AA	X_X	X_X
3._RUQ_1683	_	GG	_	_	GG	_	_	_	_	_	_	AA	X_X	X_X
4._GC-01-089-5-06	AA	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X
5._GC-01-089-5-06	AA	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X
6._GC-01-089-5-06	AA	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X
7._GC-01-089-5-06	AA	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X
8._RUQ_1638	_	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X
9._RUQ_1638	_	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X
10._UF_712	_	GG	TT	_	_	_	CC	_	_	TT	TT	AA	X_X	X_X
11._UF_712	_	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X
12._UF_712	_	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X
13._UF_712	_	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X
14._UF_712	_	GG	TT	_	_	_	CC	GG	_	TT	TT	AA	X_X	X_X
15._RUQ_1683	_	GG	TT	_	-	CC	_	_	_	_	_	AA	X_X	X_X
16._RUQ_1638	_	GG	TT	_	-	CC	_	_	_	_	_	AA	X_X	X_X
17._UF_712	_	GG	TT	_	_	_	CC	_	_	TT	TT	AA	X_X	X_X

Input profile: UF_712 RUQ_1683

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._UF_712 MITC-000350

identical
82 shared markers

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USDA-SHRS, United States of America

2._UF_712 MITC-000039

identical
82 shared markers

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USDA-SHRS, United States of America

3._UF_712 RUQ_1683

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._UF_712 GC-01-089-5-06

49.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._UF_712 RUQ_1638

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._UF_712 RUQ_1638

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._UF_712

47.1 %
34 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

11._UF_712

47 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

12._UF_712

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._UF_712

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

14._UF_712

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._UF_712 RUQ_1638

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._UF_712

42.4 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998